| RGDMIN |
Prediction of geometry of
Rg...molecule dimers with a simple distributed
model for dispersive interaction
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The program minimises interaction energy between a
rare-gas atom and a molecule, which is assumed to consist
of dispersive attraction counterbalanced by hard sphere
repulsion. The anisotropy of the dispersive interaction
is modelled by replacing atomic polarisabilities by cubes
of their covalent radii.
References:
- Z.Kisiel, J.Phys.Chem. 95,
7605-7612 (1991) - model
- Z.Kisiel, P.W.Fowler, A.C.Legon, J.Chem.Phys.
95, 2283-2291 (1991) - use of
model to rationalise geometries of Ar...CH2CHF,
Ar...CH2CF2, Ar...CHFCF2
Principal features:
- automatic assignment of model
parameters which can be overriden
- fixed geometry calculation
- full and limited minimisation (eg.
for potential characterisation)
- Rg-atom translation vector can be
either cartesian or polar
- input of translation vector from
keyboard or file
- output to screen and two types of
files
RGDMIN runs interactively and can use up to four
different files:
- Main input file with containing
molecular data, specified at run-time by the user
- Optional file containing initial
starting positions of Rare gas atom B, user named
- Main output file containing
results of minimisations, user named
- Ancillary output file containing
details of individual iterations, this has a
fixed name: MONITOR
RGDMIN is a much simplified derivative version of MIN16.
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| RGDMIN.FOR |
The listing. |
| RGDMIN.EXE |
Executable for any PC, from
compilation with MSF5. Runs from the command line. |
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Examples |
| OFTKR.RGD |
Data file for o-F-toluene...Kr |
| OFTKR.RES |
Results file containing the
principal geometries identified using
starting piositions in STARTG.RGD. |
| STARTRG.CFG |
An array of starting coordinates
for minimisation of dimer geometry. The
idea is to provide either a hemisphere or
a sphere of starting points so that the
most important local minima will be
located. |
| MONITOR |
The MONITOR file summarising the geometries
for the complex above located with STARTRG.CFG. Note
that, in general, quite a few local
minima will be found. The majority are
physically sensible, but some may be an
artifact of the hard sphere repulsion
used in the model - see Fig.8 of the
paper on the model.
In the present case
RUN.1 converges to the global minimum,
RUN.4 is probably a spurious minimum very
close to the global one, RUN.23 is a
competing local minimum, RUN.29 is an
insignificant local minimum.
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| MIN16 |
Geometries of hydrogen bonded dimers
from the electrostatic model of Buckingham and
Fowler
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This program is descended directly from Patrick Fowler's
program V used in the development of the electrostatic
model.
The B&F model is based on the idea that the dominant
contribution to interaction energy comes from the
electrostatic term. This can be rather satisfactorily
modeled by using the distributed multipole analysis (DMA)
of electron charge distribution, and the resulting
attractive electrostatic term is counterbalanced by a
hard van der Waals sphere repulsive term. The program
searches for minima in intermolecular interaction energy
between molecules A and B by reorienting molecule B
around molecule A.
Note that a rather more developed program for such
calculations, ORIENT, is available
from Anthony Stone in Cambridge.
References:
- Buckingham and Fowler, J.Chem.Phys.
79, 6426 (1983) - electrostatic
model
- Buckingham and Fowler, Can.J.Chem.
63, 2018 (1985) - electrostatic
model
- Price and Stone, J.Chem.Phys.
86, 2859 (1987) - repulsive wall
as used in MIN16
- Stone, Chem.Phys.Lett. 83,
233 (1981) - DMA
- Kisiel, Fowler, Legon, J.
Chem. Phys. 93, 3054
(1990); 93, 6249 (1990); 101,
4635 (1994) - some of the first applications of
this program
- A.D.Buckingham - in Intermolecular
Interactions - From Diatomics to Biopolymeders:
Pullman, B., Ed.; Wiley: New York, 1978; Chapter
1 - invaluable tutorial on concepts and
procedures used in MIN16
Key
features of MIN16:
- calculation of electrostatic
interaction energy (Ees)int
up to quadrupole
- calc of (Ees)int
with all terms up to t4 = tabgd (ie all quadrupole terms and
charge.octopole + dipole.octopole +
charge-hexadecapole)
- calc of (Ees)int
with all terms up to octopole (t6)
- calc of (Ees)int
limited by t6 and
hexadecapole
- calc of (Ees)int
limited by t7 and
hexadecapole
- calc of (Ees)int
with all terms up to hexadecapole (t8)
- full minimisation (6 parameters =
3 in translation vector, and 3 rotation angles of
molecule B relative to A)
- limited minimisation - only one of
the three translation vector parameters (R) is
minimised
- fixed geometry calculation
- translation vector input in either
Cartesian or polar form
- input of translation vector from
keyboard or file
- output to screen and two types of
files
- recovery of molecular multipoles
from distributed multipoles
- inspection of selected structural
parameters
MIN16 is accompanied by several programs for
extracting DMA's from output of various ab initio
packages and for managing DMA arrays.
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| MIN16.FOR |
The listing - this is a
straightforward numbercrunching program
and has been compiled on several
hardware/software architectures including
Pentium/SG/DOS/UNIX. The use of the -static option for the f77 compiler family is mandatory. |
| MIN16.EXE |
Executable for
Win98/Win2K/XP.
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Examples |
| MECPHF.HEX |
Sample
data file, for the
methylenecyclopropane...HF hydrogen
bonded dimer. This was used to produce
the results reported in Chem.Phys.Lett.
232, 187 (1995). |
| MECPHF.RES |
Abbreviated
results file for the above, with runs
identifying the two geometries reported
in the paper. Each
section containing the Cartesians for the
minimised geometry can be cut out and
viewed directly with PMIFST.
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| MECPHF.MON |
The
monitor file showing abbreviated results
of minimisations carried out from
starting points in START.CFG. Note how these results split
between the two geometries. |
| START.CFG |
File
containing an array of starting
configurations for the minimisation. The
idea is to provide either a hemisphere or
a sphere of starting points so that the
most important local minima will be
located.
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Companion
programs |
| EXTRACT.FOR |
Extraction
of DMA from output of CADMAC, SYSMO (and
possibly GAMESS UK) and conversion into
the form used by MIN16. Not used for some time and
might need some modification. |
| GAMDMA.FOR |
Extraction
of DMA from GAMESS
output and conversion into the form for MIN16. This has almost exclusively
been used with PC GAMESS - note that
GAMESS only produces DMA's up to octupole
and the hexadecapoles are set to zero. |
| DMAROT.FOR |
Program
for transformations (rotation,
translation, shift of expansion origin)
on a DMA array. |
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