| XIAM |
Version 2.5E
of Holger Hartwig's IAM internal rotation program
for up to three symmetric internal rotors and up
to one quadrupolar nucleus
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This program has been kindly deposited by Heinrich
Maeder of the Kiel group who is
currently its custodian and can pass communications to
Holger. Although Holger
Hartwig can still be contacted
he is now working outside academia. The downloads section
first contains the unchanged program distribution package
as received from Kiel, which is followed by some add-ons
resulting from the experience in using this program in
Warsaw.
XIAM uses the extended Internal Axis Method proposed
by Woods to treat internal rotation in an asymmetric top
molecule and the principal features are:
- up to three symmetric internal
rotors
- up to one quadrupolar nucleus with
weakly interacting nuclear quadrupole coupling
- centrifugal distortion up to sixth
order for the pure rotational part
- centrifugal distortion up to
fourth order between internal and overall
rotation
- some top-top coupling terms for
analysis of excited states of internal rotation
- high speed of operation due to
suitable basis transformations and matrix
factorisation
The recommended reference for citing the use of XIAM is:
H.Hartwig and H.Dreizler, Z. Naturforsch 51a,
923-932 (1996).
Definition of the empirical internal rotation-overall
rotation distortion operator programmed into XIAM as terms Dpi2J, Dpi2K and Dpi2-:
N.Hansen, H.Mader and T.Bruhn, Molec. Phys. 97,
587-595 (1999).
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The
official XIAM distribution package |
| README.TXT |
Description of the
distribution package for the program,
which consists of the four files in the
lefthand column of this table |
| XIAM-V25.TXT |
The documentation file |
| XIAM-25E.TGZ |
The gnuzipped tar archive of the
source files as received from Kiel. In
the Windows world this can be opened
easily with a utility such as Windows Commander. Note that input is to carry
extension .xi and output carries extension .xo |
| EXAMPLES.TGZ |
The gnuzipped tar archive
containing input and output for several
different examples. These are:
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XIAM
extras from the webmaster |
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| SAMPLE.XI |
A
commented sample input file (for
acetaldehyde), where some information
from the documentation has been put in
using the commenting options allowed by
the program. This
commenting is only to serve as quick
reference for the available options and
not as a substitute reading the real
documentation (and some papers!).
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| XIAM.EXE |
Win95/98/NT
executable, compiled with the MSPS4
compiler, with array dimensioning as in
the distribution listings. Since this is
a pure number-crunching program the
problems described in connection with
graphics are not applicable. |
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Modified
XIAM |
| XIAMALL.FOR |
This is a
derivative of the 'official' version of
XIAM. This source file combines in one
file all the constituent source modules
for the program, with the exception of
those directly below. Minimum descriptive
commenting has been placed at the top of
this source, and in several other places. The changes to the original
source are identified with zk or ! zk xiam4 in the comment field and these
are either tweaks to the output formats
or changes making the fitting statistics
more directly comparable with those from
SPFIT.
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| IAM_.FOR IAMDATA_.FOR
MGETX_.FOR
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These are source modules
that are combined with the main source on
compilation by means of the INCLUDE
statements in XIAMALL.FOR. All three
modules have to be placed in the same
directory as XIAMALL.FOR. The various
PARAMETER statements at the top of the
IAM_.FOR file serve to configure the
program but as Holger Hartwig writes: please
change the following parameters only if
you really know what you are doing !
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| XIAM4.EXE |
An
executable for a Pentium IV generated by
the Intel Visual Fortran Compiler
ver.9.1, using the options: ifort -O3
-QxN -static -exe:xiam4 xiamall.for
This version is
tailored for large single rotor datasets
from mmw spectra (3000 lines and up to J=70)
and will use up to 228 Mb of RAM so it
should be run on a machine with at least
0.5 Gb.
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XA = Xiam to
Ascp converter |
| XA.FOR XA.EXE
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This XIAM->ASCP converter will take XIAM output and produce a file in
the .ASR standard that can be displayed
by the stick display programs ASCP_L
or ASCP.
At the moment XA only deals with output produced
with the ints 3 option, the rigid rotor lines
are disregarded, and the intensity is
taken from the total column. The internal rotation
labels Sn Vm Bk are placed as n,m,k into the last three quantum
numbers of the lower state.
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| ERHAM |
Peter
Groner's Effective Rotational HAMiltonian
program for molecules with up to two periodic
large-amplitude motions
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This program has been kindly deposited by its author, Peter
Groner, from Department of
Chemistry at the University of Missouri, Kansas City.
ERHAM
sets up and solves the "Effective rotational
Hamiltonian for molecules with two periodic
large-amplitude motions". It allows to fit
spectroscopic constants to observed transition
frequencies (usually to experimental precision) and to
predict the spectrum.
The
reference for citing the use of ERHAM
is: P. Groner, J. Chem. Phys. 107,
4483-4498 (1997).
Principal features:
- One or two internal rotors, not restricted to
threefold rotors
- Models and symmetry groups:
- Equivalent rotors: C2v,
C2, Cs
- Non-equivalent rotors: Cs,
C1
- Single rotor: Cs,
C1
- max(J) = 120
- Number of transitions in fit < 8191
- Modular input for tunneling
parameters
- Tunneling energy parameters eqq
- Tunneling contributions to rotational and
distortion constants
- Quartic and sextic centrifugal distortion
constants (A-reduction); higher order CD
terms may be defined using the tunneling
parameter input which can also be used to
define terms for the S-reduction
- Global fit of several non-interacting vibrational
states to the same r-vector
parameters
- high speed of operation due to
suitable basis transformations and matrix
factorisation
Some published applications:
- Dimethyl ether (GS = ground
state): P. Groner et al., Astrophys. J. 500,
1059-1063 (1998)
- Acetone (GS): P. Groner et al., Astrophys. J.
Suppl. Ser. 142, 145-151
(2002)
- Acetone ( 1st torsional excited
state): P. Groner et al., J. Mol. Struct.
in press (2006)
- Acetone-13C (equivalent,
non-equivalent): F. J. Lovas & P. Groner, J.
Mol. Spectrosc. 236,
173-177 (2006)
- Ethyl methyl ether (GS, nonequivalent): U. Fuchs
et al., Astrophys. J. Suppl. Ser. 144,
277-286 (2003)
- 3-Methyl-1,2-butadiene (global fit of GS and 1st
torsional excited state): S. Bell et al., J.
Phys. Chem. A 104, 514-520
(2000)
- Dimethyl diselenide (GS, isotopomers with C2
or C1 symmetry): P. Groner et
al., J. Mol. Spectrosc. 226,
169-181 (2004)
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The
ERHAM package, version v16g of June 2006 |
| ERHAM.FOR |
Source listing |
| ERHAM.EXE |
Executable for Win32
systems |
| ERHAM.TXT |
Documentation file |
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Input
and output examples |
| AC13C1G.IN AC13C1G.OUT
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Acetone 13C1
ground state |
| DMAG.IN DMAG.OUT
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Dimethylallene,
Demaison et al., J.Mol.Spectrosc.
40, 445-460 (1971); 68,
97-113 (1977) |
| DMDSEG.IN DMDSEG.OUT
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Dimethyl
diselenide 78Se80Se.
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ERHAM
extras from the webmaster |
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| ERHCONST.TXT
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Indices and names for
the ERHAM
constants |
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ERHAMZ = tweaked
version of ERHAM |
| ERHAMZ.FOR ERHAMZ.EXE
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This is a derivative of
the 'official' version of ERHAM
above with tweaks to some FORMAT
statements and with additional code for
picking out worst lines in the dataset. All
modifications are marked with the string ! zk in the
comment columns.
The executable is for a Pentium IV as
generated by the Intel Visual Fortran Compiler ver.9.1, using
the options :
ifort
-O3 -QxN -static erhamz.for
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LINERH = LIN to
ERHam converter |
| LINERH.FOR LINERH.EXE
LINERH.INP
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Utility to convert lines
from the .LIN
format of SPFIT
to a block suitable for use in ERHAM
input file. The steering file LINERH.INP
holds pertinent control information (to
be reedited) and should reside in the
same directory as the input file. |
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ERHASR = ERHam to
ASR converter |
| ERHASR.FOR ERHASR.EXE
ERHASR.INP
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Utility to convert ERHAM
predictive output into the form suitable
for stick display programs ASCP_L
or ASCP.
The steering file ERHASR.INP
holds pertinent control information (to
be reedited) and should reside in the
same directory as the input file. |
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ERHRES = ERHam to
RES converter |
| ERHRES.FOR ERHRES.EXE
ERHRES.INP
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Utility to convert ERHAM
output into the form compatible with the .RES output of ASFIT
or PIFORM
with various enhanced readability
features. The file DMAG.RES is an
example of using ERHAM
followed by ERHRES.
The .RES
file can be used by the program AC
of the AABS
package for making dataset distribution
plots.
In addition to the .RES file ERHRES
will also generate a .LIN file for
possible use by SPFIT or by the ASCP_L
display program of AABS.
NOTE: ERHAM
allows empty lines to be placed between
transitions, which are transferred by ERHRES to
both the .RES output,
and as appropriate comments in the .LIN output,
for later use by PIFORM.
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| BELGI |
The BELGian Internal Rotor
Program
of Isabelle Kleiner et
al.
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This program has been kindly deposited by its principal
author, Isabelle Kleiner, from Laboratoire Interuniversitaire des
Systèmes Atmosphériques, LISA, (Université paris 7 et
Paris 12 et CNRS, Créteil, France). The
program has a long history, detailed in the readme, and the remaining authors (in
chronological order) are:
- M. Godefroid from the "Laboratoire de
Chimie Quantique et Photophysique" , Free
University of Brussels (Belgium),
- J. T. Hougen from the National Institute
for Standards and Technology (NIST, Gaithersburg,
USA),
- L-H. Xu from Department of Physical
Sciences, University of New Brunswick,
- J. Ortigoso from Instituto de Estructura
de la Materia, CSIC (Madrid, Spain),
- V. Ilyushin from the Radio Astronomy
Institute of NASU, Kharkov (Ukraine)
- M. Carvajal-Zaera from the Departamento de
Fisica Aplicada, University of Huelva (Spain)
BELGI uses
the rho-axis system method (RAM), and the code presently
posted, BELGI-Cs,
allows the user to calculate and fit the energies of
transitions for molecules containing an internal rotor
(of C3v symmetry) which can
turn relative to the rest of the molecule (of Cs
symmetry).
The
reference for citing the use of BELGI-Cs
is: J. T. HOUGEN, I. KLEINER and M. GODEFROID, J.
Mol. Spectrosc., 163, 559-586 (1994).
Principal characteristics of BELGI-Cs:
- Fit one internal rotor of C3v
symmetry (like a CH3 group),
while the rest of the molecule possesses a plane
of symmetry (Cs).
- Jmax = 30
- Up to 80000 lines to fit or to calculate
- Up to 80 parameters of fit in each vibrational
state
- Up to 2 vibrational states
- A two-step diagonalisation with:
- the diagonalisation of a 21x21 torsional
matrix for each K and s
value (K is the projection of J
on the symmetry axis of the molecule and s
is the symmetry with s = 0 for
the A states and s = 1
for the E states), and
- the diagonalisation of the rotation,
centrifugal distortion and
rotation-torsion coupling terms of the
Hamiltonian (dimension (9)*(2J+1)
x (9)*(2J+1))
- A global fit of the A and E
species corresponding to ALL the torsional levels
(up to the 9th torsional state vt
0, 1
8)
Some published works with
background information and examples of use:
"The
Third and Fourth Torsional States of Acetaldehyde,
I. KLEINER, J. T. HOUGEN, J. U. GRABOW, S. P. BELOV, M.
Yu. TRETYAKOV and J.COSLEOU , J. Mol. Spectrosc.,
179, 41-60 (1996).
"
The K-rotational labelling problem for
eigenvectors from internal rotor calculations:
Application to energy levels of acetaldehyde below the
barrier, J. ORTIGOSO, I. KLEINER and J. T. HOUGEN, J.
Chem. Phys., 110, 11688-11699 (1999)
"Microwave
Spectra of Astrophysical Interest, I. KLEINER, F.
J. LOVAS and M. GODEFROID, J. Phys. Chem. Ref. Data,
25 (4), 1113-1210 (1996).
"The
n14 Fundamental
Band of Acetaldehyde, I. KLEINER and M. HERMAN, J.
Mol. Spectrosc. 167, 300-313 (1994).
The
Ground and First Excited Torsional States of Acetic
Acid, V. V. ILYUSHIN, E. A. ALEKSEEV, S. F. DYUBKO,
S. V. PODNOS, I. KLEINER, L. MARGULES, G. WLODARCZAK, J.
DEMAISON, J. COSLEOU, B. MATE, E. N. KARYAKIN, G.
GOLUBYATNIKOV; G. T. FRASER, R. D. SUENRAM and J. T.
HOUGEN, J. Mol. Spectrosc. 205, 286-303
(2001).
The
Second Torsional State of Acetic Acid, V. V.
ILYUSHIN, E. A. ALEKSEEV, S. F. DYUBKO, and I. KLEINER, J.
Mol. Spectrosc. 220, 170-186 (2003).
A
new scheme of K-labeling for torsion-rotation
energy levels in low-barrier molecules, V. V.
ILYUSHIN, J. Mol. Spectrosc., 227,
140-150 (2004).
Ground
and first torsional states of acetamide, V. V.
ILYUSHYN, E. A. ALEKSEEV, S. F. DYUBKO, I. KLEINER, J. T.
HOUGEN, J. Mol. Spectrosc. 227, 115-139
(2004).
Conformational
analysis of the jet-cooled peptide mimetic Ethyl
Acetamidoacetate, from torsion-rotation spectra, R.
J. LAVRICH, A. R. HIGHT WALKER, D. F. PLUSQUELLIC, I.
KLEINER, R. D. SUENRAM, , J. T. HOUGEN and G. T. FRASER, J.
Chem. Phys. 119, 5497-5504 (2003).
The microwave spectrum of a
two-tops methyl rotor peptide mimetic: The N-acetyl
alanine methyl ester molecule, D. F. PLUSQUELLIC ,
I. KLEINER, J. DEMAISON, R. D. SUENRAM, R. J. LAVRICH, F.
J. LOVAS, , G. T. FRASER, V. V. ILYUSHIN, J. Chem.
Phys. 125, 104312 (2006).
The ground and first excited
torsional states of methyl carbamate, V.V.
ILYUSHIN, E. ALEKSEEV, J. DEMAISON and I. KLEINER, J.
Mol. Spectrosc. 240, 127 (2006).
Application to methanol
G. Paciga, S.B. Zhao, R.M. Lees,
Li-Hong Xu, and G. Moruzzi, Methanol 18O
FIR Spectroscopy: Ritz and Global Analysis, J.
Mol. Spectrosc., submitted, Dec. 2006.
H.S.P. Muller, Li-Hong Xu and F.F.S.
van der Tak, Investigations into the Millimeter and
Submillimeter-Wave Spectrum of Perdeuterated Methanol, CD3OD,
in its Ground and First Excited Torsional States, J.
Mol. Struct. 795, 114-133 (2006).
Li-Hong Xu, R.M. Lees, P. Wang, L.R.
Brown, I. Kleiner and J.W.C.Johns, New Assignments,
Line Intensities and HITRAN Database for CH3OH at
10um, J. Mol. Spectrosc. 228,
453-470 (2004).
M.S. Walsh, Li-Hong Xu, R.M. Lees,
I. Mukhopadhyay, G. Moruzzi, Li-Hong Xu and F.J. Lovas,
Microwave Spectra of Molecules of Astrophysical
Interest XXIV: Methanol (CH3OH and 13CH3OH),
J. Phys. Chem. Ref. Data, 26,
17-156 (1997).
Li-Hong Xu, M.S. Walsh and R.M.
Lees, Global Fit of Torsion-Rotational Transitions
in the Ground and First Excited Torsional States of 13C-Methanol,
J. Mol. Spectrosc. 179, 269-281
(1996).
Li-Hong Xu and Jon T. Hougen,
Global Fit of Rotational Transitions in the Ground
and First Excited Torsional States of Methanol, J.
Mol. Spectrosc. 173, 540-551
(1995).
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The
BELGI-Cs package |
| BELGI-Cs.FOR |
Source listing. The
program uses two routines from the IMSL
library that have to be provided at
compilation time. The two routines are DLSVRR for singular value
decomposition, and DLINRG for matrix inversion. |
| BELGI-Cs.EXE |
Executable for Win32
systems. The program assumes that the
input is always in the file input.txt, and writes to the default
output device, which is normally the
screen. If you want to save the output to
a file, say belgi.out, use the command belgi>belgi.out
The program may spend a
lot of time without apparent output, so
you can use the Task Manager to check CPU
usage. It also creates a file called DAT for its own use - this file is
not deleted by the program on completion
of execution but will be replaced on
another run of BELGI.
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| README.DOC |
The main documentation file for
the program, which includes discussion of
its features, internal structure, format
of the input file, the meaning of the
parameters, and concludes with a special
section on the history of BELGI development and applications. |
| CONSTANTS.TXT |
Table summarising the
terms in the vibration-rotation
Hamiltonian that can be used in BELGI:
the angular momentum operators and the
identifiers for the associated constants. |
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Input
and output examples |
| INPUT.TXT
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Input
file for methyl carbamate, H2NC(O)OCH3,
ground and first torsional states, J.
Mol. Spectrosc., 240,
127 (2006). |
| MECARB.OUT
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Output
file for methyl carbamate produced from
the input above. |
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