The method and the parameters are described in our papers:
M. Chwastyk, M. Jaskolski, M. Cieplak,
Structure-based thermodynamic and mechanical stability of plant PR-10 proteins with cavities.
FEBS J. 281: 416-429 (2014)
(see http://onlinelibrary.wiley.com/doi/10.1111/febs.12611)
M. Chwastyk, M. Jaskolski, M. Cieplak,
The volume of cavities in proteins and virus capsids.
Proteins. 84(9): 1275-1286 (2016)
(see https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25076)
To start the calculations, you should provide adequate parameters. Fields marked by an asterisk (*)
are required. We can check your parameters before the start of the calculations, but it may take
some time. If you wish that, just mark the box "Please check my parameters". We recommend to use
the default parameters, except that the number of rotations, which should be increased for more
accurate results. 100 rotations is very accurate. You should copy and paste the PDB file of your
structure into the window provided. It is important to keep the standard PDB format. The results
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