prof. dr hab. Marek Cieplak
Institute of Physics, Polish Academy of Science
SL 4 - Laboratory of Biological Physics
Al. Lotnikow 32/48,
02-668 Warszawa
Poland

Current CV
SPACEBALL
rCSU contact maps
PolyQ structures

Personal Data

Born: December 8, 1950, Warsaw, Poland.
Citizenship: Polish.
Martial Status: Married, 2 daughters.

Education

  • D.Sc., 1984, Warsaw University, Poland
    Thesis: Nature of ordering in spin glasses

  • Ph.D. 1977, University of Pittsburgh, USA
    Thesis advisor: Frederic Keffer
    Thesis: Theoretical problems in magnetism

  • M.Sc., 1973, with honors
    Physics Department, Warsaw University
    Research advisor: Jaroslaw Piasecki
    Thesis: Correlation functions in van der Waals fluids

Employment

In Poland

  • 1973-1989 Institute of Theoretical Physics, Warsaw University

  • since 1989 Institute of Physics, Polish Academy of Science
    Full Professor since 1995

In the USA

  • 1975-1977 graduate student, Department of Physics and Astronomy, University of Pittsburgh, PA

  • 1981-1983 postdoctoral fellow, Department of Physics and Astronomy, Rutgers University, NJ

  • summer 1984 visiting professor, Department of Polymer Science, University of Massachusetts, Amherst, MA

  • 1987-1989 visiting associate professor, Department of Physics and Astronomy, Johns Hopkins University, MD
    later research visiting appointments: 1992, 1996, 2001

  • each year between 1990 and 2008: at least one month long visits, at Physics Department, Penn State University, PA; e.g. September 2000 - February 2001 visiting professor

  • summers 1991-2000 summer lecturing, Physics Department, Rutgers University, NJ

  • summers 2001-2015 summer lecturing, Department of Physics and Astronomy, Johns Hopkins University, MD

Short term employment in other countries

  • 1978, 1979, 1983 Physics Department, Chalmers University of Technology, Gothenburg, Sweden

  • 1985 Department od Physics, Universitat Konstanz, Germany

  • 1992 Universite Pierre et Marie Curie, Paris, France

  • 1993, 1994 University of Padova, Italy

  • 1996 CINVESTAV, Mexico City, Mexico

  • 1995, 1997 International School for Advanced Studies, Trieste, Italy

Other

  • Fellow of the American Physical Society, 1998

  • Outstanding Referee of the American Physical Society, 2008

  • Professor of the Month of June at Johns Hopkins University, Baltimore, MD, USA, awarder by the Alpha-Kappa-Phi Sorority, July 2001

  • Member of the executive board of Division of Physics in Life Science http://www.ifpan.edu.pl/DPL/

  • On the editorial board of "Fractals" and Journal of Physics: Condensed Matter

  • eleven graduate students

  • eight M.Sc. students

  • Hirsch factor 39

  • More than 4600 citations without self-citations (Web of Science 2018)

  • 104 invited lectures at conferences


List of publications

I. Biological Physics
  1. Kinetics of protein folding in lattice models
  2. Kinetics of protein folding in molecular dynamics studies
  3. Stretching and thermal unfolding of proteins
  4. Genetic micro-arrays
  5. Structure prediction and related subjects
  6. Knots and entanglements
  7. Cellulosome
  8. Virus capsids
  9. Proteins at solid-water, fluid-fluid interfaces and molecular crowding
  10. Intrinsically disordered proteins
  11. Biological physics - other
II. Condensed Matter Physics
  1. Spin waves, dynamical structure factor of magnetic chains, solitions
  2. Disordered systems - mostly magnetic
    1. Granular superconductors, percolation, fractals
    2. Spin glasses and other frustrated systems
    3. Mesoscopic spin glasses
    4. Random field and random anisotropy systems
    5. Optimal paths and strong disorder
  3. Porous media
  4. River networks
  5. Atomic friction
  6. Hydrodynamic cellular automata
  7. Molecular dynamics studies of gases (Knudsen flows) and liquids
  8. Nano-particles and self-assembly



Publikacje


Kinetics of protein folding in lattice models


Design of rapidly folding protein-like heteropolymer chains and their cell dynamics - a lattice model study
S. Vishveshwara, I. Shrivastava, M. Cieplak, and J. R. Banavar
Indian Institute of Science Journal 77, 339 (1997)
PobierzMaster equation approach to protein folding and kinetic traps
M. Cieplak, M. Henkel, J. Karbowski, and J. R. Banavar
Phys. Rev. Lett. 80, 3654 (1998)
Link do pliku
PobierzCoarse grained description of the protein folding
M. Cieplak and Trinh Xuan Hoang
Phys. Rev. E 58, 3589 (1998)
Link do pliku
PobierzProtein folding and models of dynamics on the lattice
Trinh Xuan Hoang and M. Cieplak
J. Chem. Phys. 109, 9192 (1998)
Link do pliku
PobierzFolding in two-dimensional off-lattice models of proteins
M. S. Li and M. Cieplak
Phys. Rev. E 59, 970-976 (1999)
Link do pliku
PobierzMaster equation approach to protein folding
M. Cieplak, M. Henkel, and J. R. Banavar
J. Cond. Mat. 2, 369 (1999)
PobierzScaling of folding properties in simple models of proteins
M. Cieplak, T. X. Hoang, and M. S. Li
Phys. Rev. Lett. 83, 1684 (1999)
Link do pliku
PobierzEnergy landscapes, supergraphs, and
P. Garstecki, T. X. Hoang, and M. Cieplak
Phys. Rev. E 60, 3219 (1999)
Link do pliku
Simple models of proteins with repulsive non-native contacts
M. S. Li and M. Cieplak
Phys. Journal. B 14, 787-792 (2000)
PobierzSpin analogs of proteins: scaling of
T. X. Hoang, N. Sushko, M. S. Li, and M. Cieplak
J. Phys. A 33, 3977-3987 (2000)
PobierzLattice tube model of proteins
J. R. Banavar, M. Cieplak, and A. Maritan
Phys. Rev. Lett. 93, 238101 (2004)
Link do pliku
The folding transition state theory in simple model systems
S. NIewieczerzal, M. Cieplak
J.Phys.:Cond.Mat. 20, 244134 (2008)

Kinetics of protein folding in molecular dynamics studies


PobierzMolecular dynamics of folding of secondary structures in Go-like models of proteins
T. X. Hoang and M. Cieplak
J. Chem. Phys. 112, 6851-6862 (2000)
Link do pliku
PobierzSequencing of folding events in Go-like proteins
T. X. Hoang and M. Cieplak
J. Chem. Phys. 113, 8319-8328 (2000)
Link do pliku
PobierzScaling of folding properties in Go models of proteins
M. Cieplak and T. X. Hoang
J. Biol. Phys. 26, 273-294 (2000)
PobierzDynamical chaos and power spectra in toy models of heteropolymers and proteins
M. S. Li, M. Cieplak, and N. Sushko
Phys. Rev. E 62, 4025-4031 (2000)
Link do pliku
PobierzKinetic non-optimality and vibrational stability of proteins
M. Cieplak and T. X. Hoang
Proteins: Structure, Function and Genetics 44, 20-25 (2001)
Link do pliku
PobierzThe range of the contact interactions and the kinetics of the Go models of proteins
M. Cieplak and T. X. Hoang
Int. J. Mol. Phys. C 13, 1231-1242 (2002)
PobierzFolding of proteins in Go models with angular interactions
M. Cieplak and T. X. Hoang
Physica A 330, 195-205 (2003)
PobierzCooperativity and contact order in protein folding
M. Cieplak
Phys. Rev. E 69, 031907 (2004)
Link do pliku
PobierzChirality and protein folding
J. I. Kwiecinska and M. Cieplak
J. Phys. Cond. Mat. 17, S1565-S1580 (2005)
Effects of confinement and crowding on folding of model proteins
M. Wojciechowski, M. Cieplak
Biosystems 94, 248-252 (2008)
Hydrodynamic interactions in protein folding
M. Cieplak, S. Niewieczerzal
J. Chem. Phys. 130,l 124905 (2009)
PobierzUniversality classes in folding times of proteins
M. Cieplak and Trinh Xuan Hoang
Biophys. J. 84, 475-488 (2003)
Link do pliku

Stretching and thermal unfolding of proteins


PobierzThermal folding and mechanical unfolding pathways of protein secondary structures
M. Cieplak, T. X. Hoang, and M. O. Robbins
Proteins: Function, Structure, and Genetics 49, 104-113 (2002)
Link do pliku
PobierzFolding and stretching in a Go-like model of titin
M. Cieplak, T. X. Hoang, and M. O. Robbins
Proteins: Function, Structure, and Genetics 49, 114-124 (2002)
Link do pliku
PobierzStretching of proteins in the entropic limit
M. Cieplak, T. X. Hoang, and M. O. Robbins
Phys. Rev. E 69, 011912 (2004)
Link do pliku
PobierzThermal effects in stretching of Go-like models of titin and secondary structures
M. Cieplak, T. X. Hoang, and M. O. Robbins
Proteins: Struct. Funct. Bio. 56, 285-297 (2004)
Link do pliku
PobierzStretching of homopolymers and contact order
M. Cieplak, T. X. Hoang, and M. O. Robbins
Phys. Rev. E 70, 011917 (2004)
Link do pliku
PobierzMechanical properties of the domains of titin in a Go-like model
M. Cieplak, A. Pastore, and T. X. Hoang
J. Chem. Phys. 122, 054906 (2005)
Link do pliku
PobierzMechanical stretching of proteins: calmodulin and titin
M. Cieplak
Physica A 352/1, 28-42 (2005)
Thermal unfolding of proteins
M. Cieplak and J. I. Sulkowska
J. Chem. Phys. 123, 194908 (2005)
Protein folding in a force clamp
M. Cieplak, P. Szymczak
J. Chem. Phys. 124, 194901 (2006)
Stretching of proteins in a force-clamp
P. Szymczak, M. Cieplak
J. Phys. : Cond. Mat. 18, L21-L28 (2006)
Predicting the order in which contactys are broken during single molecule protein stretching experiments
J. I. Sulkowska, A. Kloczkowski, T. Z. Sen, M. Cieplak, R. L. Jernigan
Proteins: Struct. Funct. Bioinf. 71, 45-60 (2008) (2008)
Stretching of proteins in a uniform flow
P. Szymczak, M. Cieplak
J. Chem. Phys. 125, 164903 (2006)
Influence of hydrodynamic interactions on mechanical unfolding of proteins
P. Szymczak, M. Cieplak
J. Phys.:Cond. Mat. 19, 285224 (2007)
Mechanical stretching of proteins: A theoretical survey of the Protein Data Bank
J. I. Sulkowska, M. Cieplak
J. Phys.:Cond.Mat. 19, 283201 (2007)
The slip-length effects in molecular dynamics of bead-like models of proteins
P. Szymczak, M. Cieplak
NIC Series Volume 36, 1-7 (2007)
Selection of optimal variants of Go-like models of proteins through studies of stretching
J. I. Sulkowska, M. Cieplak
Biophys. J. 95, 3174-3191 (2008)
Protein mechanics at the single-molecuyle level
M. Carrion-Vazquez, M. Cieplak, A. F. Oberhauser
Encyclopedia of Complexity and Systems Science, Springer, ed. R. A. Meyers, pp. 7026-7050, New York (2009)
Stretching and twisting of the DNA duplexes in course-grained dynamical models
S. NIewieczerzal, M. Cieplak
J. Phys.:Cond.Mat. 21, 474221 (2009)
On the remarkable mechanostability of scaffoldins and the mechanical clamp motif
A. Valbuena, J. Oroz, R. Hervas, A. M. Vera, D. Rodriguez, M. Menendez, J. I. Sulkowska, M. Cieplak, M. Carrion-Vazquez
Proc. Natl. Acad. Sci. USA 106, 13791-13796 (2009)
Tests of the structure-based models of proteins
M. Cieplak, J. I. Sulkowska
Acta. Phys. Polonica A 115, 441-445 (2009)
PobierzMechanical Strength of 17 134 Model Proteins and Cysteine Slipknots.
Mateusz Sikora, Joanna Sułkowska, Marek Cieplak
PLoS Comput. Biol. 5: e1000547. doi:10.1371/journal.pcbi.1000547 (2009)
Structure-based models of biomolecules: stretching of proteins, dynamics of knots, hydrodynamic effects, and indentation of virus capsids
M. Cieplak, J. I. Sulkowska
Multiscale approaches to protein modeling: structure prediction, dynamics, thermodynamics and macromolecular assemblies, ed. A. Kolinski, Springer, New York pp. 179-208 (2010)
Understanding biology by stretching proteins: recent progress
A. Galera-Prat, A. Gomez-Sicilia, A. F. Oberhauser, M. Cieplak, M. Carrion-Vazquez
Curr. Op. Struct. Biol. 20, 63-69 (2010)
PobierzMolecular jamming – the cysteine slipknot mechanical clamp in all-atom simulations
Łukasz Pepłowski, Mateusz Sikora, Wiesław Nowak, Marek Cieplak
J. Chem. Phys. 134:085102 (2011)
BSDB: the biomolecule stretching database
Mateusz Sikora, Joanna I. Sułkowska, Bartłomiej S. Witkowski, and Marek Cieplak
Nucl. Ac. Res. D443-D450. doi: 10.1093/nar/gkq851 (2010)
Link do pliku
PobierzMechanical stability of multidomain proteins and novel mechanical clamps
Mateusz Sikora, Marek Cieplak
Proteins: Struct. Funct., and Bioinf. 79:1786 (2011)
Cystine plug and other novel mechanisms of large mechanical stability in dimeric proteins.
Mateusz Sikora, Marek Cieplak
Physical Review Letters 109(20):208101 (2012) PMID 23215525 (2012)
Link do pliku
Formation of Cystine Slipknots in Dimeric Proteins
Mateusz Sikora, Marek Cieplak
PLOS One 8(3): e57443. doi:10.1371/journal.pone.0057443 (2013)
Link do pliku
PobierzMechanical unfolding of ubiquitin molecules
M. Cieplak and P. E. Marszalek
J. Chem. Phys. (in press) (0)
Mechanical unfolding of ubiquitin molecules
M. Cieplak and P. E. Marszalek
J. Chem. Phys. 123, 194903 (2005)
PobierzUnbinding and unfolding of adhesion protein complexes through stretching: Interplay between shear and tensile mechanical clamps
Bartosz Rozycki, Lukasz Mioduszewski, Marek Cieplak
Proteins: Structure, Function, and Bioinformatics 82: 3144-3153 (2014)
Link do pliku
Pulling single bacteriorhodopsin out of a membrane
M. Cieplak, S. Filipek, H. Janovjak, K. A. Krzysko
BBA - Biomembranes 1758, 537-544 (2006)

Genetic micro-arrays


PobierzFundamental patterns underlying gene expression profiles: simplicity from complexity
N. S. Holter, M. Mitra, A. Maritan, M. Cieplak, J. R. Banavar, and N. V. Fedoroff
Proc. Natl. Acad. Sci. USA 97, 8409-8414 (2000)
PobierzDynamic modeling of gene expression data
N. S. Holter, A. Maritan, M. Cieplak, N. V. Fedoroff, and J. R. Banavar
Proc. Natl. Acad. Sci. USA 98, 1693-1698 (2001)
Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns
T. R. Lezon, J. R. Banavar, M. Cieplak, A. MAritan, N. Fedoroff
Proc. Natl. Acad. Sci. USA 103, 19033-19038 (2006)
The most probable genetic interaction network inferred from gene expression patterns
T. R. Lezon, J. R. Banavar, M. Cieplak, A. Maritan, N. Fedoroff
In "Analysis of Microarray Data: Network Based Approaches, eds. F. Emmert-Streib and M. Dehmer, Wiley-VCH Verlag, Weinheim pp. 385-412 (2008)

Structure prediction and related subjects


PobierzProtein threading by learning
I. Chang, M. Cieplak, R. I. Dima, A. Maritan, and J. R. Banavar
Proc. Natl. Acad. Sci., 14351-14355 (2001)
PobierzPrediction of protein secondary structures from conformational biases
T. X. Hoang, M. Cieplak, J. R. Banavar, and A. Maritan
Proteins: Function, Structure, and Genetics 48, 558-565 (2002)
Link do pliku
PobierzAssembly of protein tertiary structures from secondary structures by simulated annealing with optimized potentials
T. X. Hoang, F. Seno, J. R. Banavar, M. Cieplak, and A. Maritan
Proteins: Function, Structure, and Genetics 52, 155-165 (2003)
Link do pliku
Geometry of proteins: Hydrogen bonding, sterics, and marginally compact tubes
J. R. Banavar, M. Cieplak, A. Flammini, T. X. Hoang, R. D. Kamien, T. Lezon, D. Marenduzzo, A. Maritan, F. Seno, Y. Snir, A. Trovato
Phys. Rev. E, 73, 031921 (2006)

Knots and entanglements


Stabilizing effect of knots on proteins
J. I. Sulkowska, P. Sulkowski, P. Szymczak, M. Cieplak
Proc. Natl. Acad. Sci. USA 105, 19714-19719 (2008)
Untying knots in proteins
J. I. Sulkowska, P. Sulkowski, P. Szymczak, M. Cieplak
J. Am. Chem. Soc. 132, 13954-13956 (2010)
Folding of knotted proteins: Insights from lattice simulations
P. F. N. Faisca, R. D. M. Travasso, T. Charters, A. Nunes, M. Cieplak
Phys. Biol. 7, 016009 (2010)
Topological features in stretching of proteins.
Marek Cieplak, Mateusz Sikora
Biochem Soc Trans. 2013 Apr;41(2):519-22. doi: 10.1042/BST20120289. (2013)
Tightening of knots in proteins
J. I. Sulkowska, P. Sulkowski, P. Szymczak, M. Cieplak
Phys. Rev. Lett. 100, 058106 (2008)

Cellulosome


PobierzLarge conformational fluctuations of the multi-domain Xylanase Z of Clostridium thermocellum
Bartosz Rozycki, Marek Cieplak, Mirjam Czjzek
J. Struct. Biol. 191: 68-75 (2015)
Link do pliku
First-principles design of nanomachines
J. R. Banavar, M. Cieplak, T. X. Hoang, A. Maritan
Proc. Natl. Acad. Sci. USA 106, 6900-6903 (2009)

Virus capsids


Nanoindentation of virus capsids in a molecular model
M. Cieplak, M. O. Robbins
J. Chem. Phys. 132, 015101 (2010)

Proteins at solid-water, fluid-fluid interfaces and molecular crowding


The infliuence of hydrodynamic interactions on protein dynamics in confined and crowded spaces
M. Wojciechowski, P. Szymczak, M. Cieplak
Phys. Biol. 7, 046011 (2010)
Denaturation of proteins near polar surfaces
A. Starzyk, M. Cieplak
J. Chem. Phys. 135, 235103 (2011)

Biological Physics - other


PobierzCitrate synthase proteins in extremophilic organisms: Studies within a structure-based model
Bartosz Rozycki, Marek Cieplak
J. Chem. Phys. 141: 235102 (2014)
Link do pliku
PobierzAmino acid classes and the protein folding problem
M. Cieplak, N. S. Holter, A. Maritan, and J. R. Banavar
J. Chem. Phys. 114, 1420-1423 (2001)
Link do pliku
Delineation of the native basin in continuum models of proteins
M. S. Li and M. Cieplak
J. Phys. A 32, 5577-5584 (1999)
PobierzWhat one can learn from experiments about the elusive transition state?
I. Chang, M. Cieplak, J. R. Banavar, and A. Maritan
Protein Science 13, 2446-2457 (2004)
Pobierzarticle (in Polish) for the Physics Encyclopedia
M. Cieplak and A. Sienkiewicz
Polish Scientific Publishing House (2003)
Coarse-grained modelling of pressure related effects in staphylococcal nuclease and ubiquitin
M. Wojeciechowski, M. Cieplak
J. Phys.Cond.MAt.: 19, 285218 (2007)
Proteins in shear flow
P. Szymczak, M. Cieplak
J. Chem. Phys. 127, 155106 (2007)
Native state dynamics and mechanical properties of human topisomerase I within a structure-based coarse-grained model
O. Szklarczyk, K. Staron, M. Cieplak
Proteins: Struct. Funct. Bioinf. 77, 420-431 (2009)
Hydrodynamic effects in proteins
P. Szymczak, M. Cieplak
J. Phys.:Cond. Mat. 23, 033102 (2011)

Spin waves, dynamical structure factor of magnetic chains, solitions


Two Bose fluid picture of a Heisenberg ferromagnet
M. Cieplak and L. A. Turski
Z. Phys. B 23, 355 (1976)
Spin-wave theory of the paramagnetic phase boundary in transversally anisotropic antiferromagnets
M. Cieplak
Phys. Rev. B 15, 5310 (1977)
Link do pliku
Spin waves in systems with weak exchange fields
M. Cieplak and F. Keffer
Phys. Rev. B 18, 1253 (1978)
Link do pliku
PobierzLocalized model for systems with double- exchange coupling
M. Cieplak
Phys. Rev. B 18, 3470 (1978)
Link do pliku
Solitons in quantum Heisenberg chain
M. Cieplak and L. A. Turski
J. Phys. C 13, 5741 (1980)
Magnetic solitons and elastic shock waves in classical compressible Heisenberg chain
M. Cieplak and L. A. Turski
J. Phys. C 13, L777 (1980)
Dynamical correlations in one-dimensional easy plane magnets
M. Cieplak and A. Sjolander
J. Phys. C 14, 4861 (1981)

Granular superconductors, percolation, fractals


Renormalization group analysis on fractals: Ising spin glass and the Schrodinger equation
J. R. Banavar and M. Cieplak
Phys. Rev. B 28, 3813 (1983)
Link do pliku
Density of electronic states in granular metals
M. Cieplak
J. Phys. F 14, 609 (1984)
Growth in systems in quenched disorder
M. O. Robbins, M. Cieplak, H. Ji, B. Koiller, and N. Martys
in Proceedings of the NATO School on Growth Patterns in Physical Science and Biology, Granada, Spain, 1991, ed. L. Sander and P. Meakin (Plenum Press, New York, 1992) (1992)
Critical phenomena in fluid invasion: transitions in growth morphology
M. Cieplak and M. O. Robbins
in Surface Disordering: Growth, Roughening and Phase Transitions, eds. R. Julien, J. Kertesz, P. Meakin, and D. E. Wolf (Les Houches workshop), Nova Sci. Publ., New York, 1992, p. 185 (1992)
Fractal domains in Ising spin glasses
M. Cieplak and M. S. Li
Fractals 2, 481 (1994)
Domain walls in the transverse field Ising spin glasses
M. S. Li and M. Cieplak
Fractals 4, 401 (1996)
PobierzOptimal paths and growth processes
M. Cieplak, A. Maritan, J. R. Banavar
Physica A 266, 291 (1999)

Spin glasses and other frustrated systems


PobierzNature of ordering in spin glasses
J. R. Banavar and M. Cieplak
Phys. Rev. Lett. 48, 832 (1982)
Link do pliku
Influence of boundary conditions on random unfrustrated magnetic systems
J. R. Banavar, M. Cieplak, and M. Z. Cieplak
Phys. Rev. B 26, 2482 (1982)
Link do pliku
Scaling stiffness of spin glasses
J. R. Banavar and M. Cieplak
J. Phys. C 16, L755 (1983)
Lower critical dimensionality of Heisenberg spin glasses
M. Cieplak and J. R. Banavar
Phys. Rev. B 29, 469 (1984)
Link do pliku
Dynamics of frustrated spin clusters
J. R. Banavar, M. Cieplak, and M. Muthukumar
J. Phys. C 18, L157 (1985)
Dynamical susceptibility of frustrated spin clusters
M. Cieplak and J. Lusakowski
J. Phys. C 19, 5253 (1986)
Metastable states in disordered ferromagnets
M. Cieplak and T. R. Gawron
J. Phys. A 20, 5657 (1987)
Dynamic spin susceptibility of semimagnetic semiconductors
M. Cieplak, M. Z. Cieplak, and J. Lusakowski
Phys. Rev. B 36, 620 (1987)
Link do pliku
Hidden valley structure of Ising spin glasses
M. Cieplak and J. Jaeckle
Zeit. Phys. B 66, 325 (1987)
Dynamic specific heat of spin glasses - studies of a 6-spin cluster
M. Cieplak and G. Szamel
Phys. Rev. B 37, 1790 (1988)
Link do pliku
Nature of ordering in Potts spin glasses
J. R. Banavar and M. Cieplak
Phys. Rev. B 40, 4613 (1989)
Link do pliku
Scaling of stiffness in Ising spin glasses
M. Cieplak and J. R. Banavar
J. Phys. A 23, 4385 (1990)
Ordering characterized by a strange attractor
B. Sundaram, M. Cieplak, and J. R. Banavar
Phys. Rev. A (Rapid Comm.) 41, 5713 (1990)
Link do pliku
Scaling of energy barriers in Ising spin glasses
T. R. Gawron, M. Cieplak, and J. R. Banavar
J. Phys. A 24, L127 (1991)
Gauge invariance and the vortex glass
M. Cieplak, J. R. Banavar, and A. Khurana
J. Phys. A 24, L145 (1991)
Frustration, scaling, and local gauge invariance
M. Cieplak, J. R. Banavar, M. S. Li and A. Khurana
Phys. Rev. B 45, 786 (1992)
Link do pliku
Universality and chaos in XY spin glasses
M. Cieplak, M. S. Li, and J. R. Banavar
Phys. Rev. B 47, 5022 (1993)
Link do pliku
Chaos in gauge glasses in the critical region
M. S. Li and M. Cieplak
Physica A, 197, 507 (1993)
Scaling properties of quantum spin glasses
M. S. Li and M. Cieplak
Physica A 207, 463 (1994)

Mesoscopic spin glasses


PobierzUniversal conductance fluctuations in spin glasses
M. Cieplak, B. R. Bulka, and T. Dietl
Phys. Rev. B 44, 12337 (1991)
Link do pliku
PobierzMagnetoconductance fluctuations in mesoscopic spin glasses
M. Cieplak, B. R. Bulka, and T. Dietl
Phys. Rev. B 51, 8939 (1995)
Link do pliku

Random field and random anisotropy systems


PobierzOrdering and phase transitions in random-field Ising systems
A. Maritan, M. R. Swift, M. Cieplak, M. H. W. Chan, M. W. Cole, and J. R. Banavar
Phys. Rev. Lett. 67, 1821 (1991)
Link do pliku
PobierzRandom-anisotropy Blume-Emery-Griffiths model
A. Maritan, M. Cieplak, M. R. Swift, F. Toigo, and J. R. Banavar
Phys. Rev. Lett. 69, 221 (1992)
Link do pliku
Dipole interactions with random anisotropy: a local mean field study
M. Zaluska-Kotur and M. Cieplak
Europhys. Lett. 23, 85 (1993)
Phase diagrams for random field Ising systems
M. R. Swift, A. Maritan, M. Cieplak, and J. R. Banavar
J. Phys. A 27, 1525 (1994)
Glassy properties of dilute dipolar Ising systems
M. Zaluska-Kotur and M. Cieplak
J. M. M. M. 136, 127 (1994)
PobierzNematic-isotropic transition in porous media
A. Maritan, M. Cieplak, T. Bellini, and J. R. Banavar
Phys. Rev. Lett. 72, 4113 (1994)
Link do pliku
Scaling of the random field Ising model at zero temperature
M. R. Swift, A. J. Bray, A. Maritan, M. Cieplak, and J. R. Banavar
Europh. Lett. 38, 273 (1997)
PobierzEffects of pore walls and randomness in phase transitions in porous media
M. Cieplak, A. Maritan, F. Toigo, M. H. W. Chan, and J. R. Banavar
Phys. Rev. E 66, 056124 (2002)
Link do pliku

Optimal paths and strong disorder


PobierzOptimal paths and domain walls in the strong disorder limit
M. Cieplak, A. Maritan, and J. R. Banavar
Phys. Rev. Lett. 72, 2320 (1994)
Link do pliku
Optimal paths and universality
M. Cieplak, A. Maritan, M. Swift, A. Bhattacharya, A. L. Stella, and J. R. Banavar
J. Phys. A 28, 5693 (1995)
Domain walls in the quantum transverse Ising model
M. Henkel, A. B. Harris, and M. Cieplak
Phys. Rev. B 52, 4371 (1995)
Link do pliku
PobierzInvasion percolation and Eden Growth: Geometry and Universality
M. Cieplak, A. Maritan, and J. R. Banavar
Phys. Rev. Lett. 76, 3754 (1996)
Link do pliku
PobierzOptimal paths and growth processes
M. Cieplak, A. Maritan
J. R. Banavar, Physica A 266, 291 (1999)

Porous media


Surface conduction and length scales in porous media
J. R. Banavar, M. Cieplak and D. L. Johnson
Phys. Rev. B (Rapid Comm.) 37, 7975 (1988)
Link do pliku
PobierzDynamical phase transition in fluid flows in porous media
M. Cieplak and M. O. Robbins
Phys. Rev. Lett. 60, 2042 (1988)
Link do pliku
PobierzCritical phenomena in fluid invasion of porous media
N. Martys, M. Cieplak, and M. O. Robbins
hys. Rev. Lett. 66, 1058 (1991); reprinted in Dynamics of Fractal Surfaces, ed. F. Family and T. Vicsek, World Scientific, Singapore 1991, p. 419 (1991)
Link do pliku
PobierzScaling relations for interface motion through disordered media: Application to two-dimensional fluid invasion
. Martys, M. O. Robbins, and M. Cieplak
Phys. Rev. B 44, 12294 (1991)
Link do pliku
PobierzEffects of pore walls and randomness in phase transitions in porous media
M. Cieplak, A. Maritan, F. Toigo, M. H. W. Chan, and J. R. Banavar
Phys. Rev. E 66, 056124 (2002)
Link do pliku

River networks


PobierzUniversality classes of optimal channel networks
A. Maritan, F. Calaioris, A. Flammini, M. Cieplak, and J. R. Banavar
Science, 272, 984 (1996)
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PobierzModels of fractal river basins
M. Cieplak, A. Giacometti, A. Maritan, A. Rinaldo, I. Rodrigues-Iturbe, and J. R. Banavar
J. Stat. Phys. 1 (1998)

Atomic friction


PobierzMolecular origins of friction: The force on adsorbed layers
M. Cieplak, E. Smith, and M. O. Robbins
Science 265, 1209 (1994)
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PobierzThe friction on adsorbed monolayers
E. Smith, M. O. Robbins, and M. Cieplak
Phys. Rev. B 54, 8252 (1996)
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Hydrodynamic cellular automata


Cellular automata studies of mixing in chaotic systems
M. Cieplak, U. D'Ortona, D. Salin, R. B. Rybka, and J. R. Banavar
Comp. Mat. Sci. 1, 87 (1992)
Cellular automata studies of circular Couette Flows: chaotic mixing
R. B. Rybka, M. Cieplak, U. D'Ortona, D. Salin, and J. R. Banavar
Phys. Rev. E 48, 757 (1993)
Link do pliku
PobierzTwo-color Boltzmann cellular automata: surface tension and wetting
U. d'Ortona, D. Salin, M. Cieplak, R. B. Rybka, and J. R. Banavar
Phys. Rev. E 51, 3718 (1995)
Link do pliku
PobierzRupture and coalescence in two-dimensional cellular automata fluids
M. Cieplak
Phys. Rev. E 51, 4353 (1995)
Link do pliku

Molecular dynamics studies of gases (Knudsen flows) and liquids


PobierzApplications of statistical mechanics in subcontinuum fluid dynamics
M. Cieplak, J. Koplik, and J. R. Banavar
Physica A 274, 281-293 (1999)
PobierzMolecular dynamics of flows in the Knudsen regime
M. Cieplak, J. Koplik, and J. R. Banavar
Physica A 287, 153-160 (2000)
PobierzBoundary conditions at a fluid - solid interface
M. Cieplak, J. Koplik, and J. R. Banavar
Phys. Rev. Lett. 86, 803-806 (2001)
Link do pliku
PobierzMotion of grains, droplets and bubbles in fluid-filled nano-pores
Nazar Sushko and Marek Cieplak
Phys. Rev. E 64, 021601 (2001)
Link do pliku
PobierzMolecular dynamics simulations of crystallization of hard spheres
I. Volkov, M. Cieplak, J. Koplik, and J. R. Banavar
Phys. Rev. E 66, 061401 (2002)
Link do pliku
Nanoscale fluid flows in the vicinity of patterned surfaces
M. Cieplak, J. Koplik, J. R. Banavar
Phys. Rev. Lett. 96, 114502 (2006)
Molecular dynamics of immiscible fluids in chemically patterned nanochannels
M. Cieplak, J. R. Banavar
J. Chem. Phys. 128, 104709 (2008)
Molecular dynamics of fluids and droplets in patterned nanochannels
M. Cieplak
Eur. Phys. J. - Spec. Topics 161, 35-44 (2008)

Nano-particles and self-assembly


Coarse-grained molecular dynamics simulations of nanopatterning with multivalent inks
M. Cieplak, D. Thompson
J. Chem. Phys. 128, 234906 (2008)
PobierzLinker-mediated assembly of gold nanoparticles into multimeric motifs
Mateusz Sikora, Piotr Szymczak, Damien Thompson, Marek Cieplak
Nanotechnology, 22:445601 (2011)
Geometrical and electrical properties of indium tin oxide clusters in ink dispersions
M. Sikora, D. Adam, P. M. Korczyk, A. Prodi-Schwab, P. Szymczak, M. Cieplak
Langmuir 28, 1523-1530 (2012)
Multi-scale modelling of coated nanocrystal aggregation in solution and deposition on surface
Damien Thompson, Mateusz Sikora, Piotr Szymczak, Marek Cieplak
submitted (2012)

 
Projekt i wykonanie - Bartłomiej S. Witkowski 2010 Instytut Fizyki Polskiej Akademii Nauk